Updated readme, added some warnings to autogenerated files that they are autogenerated

ChangeAppSettings.sh

@@ -383,7 +383,8 @@ mkdir -p project/src
 cd project/java
 for F in *.java; do
 	echo Patching $F
-	cat $F | sed "s/package .*;/package $AppFullName;/" > ../src/$F
+	echo '// DO NOT EDIT THIS FILE - it is automatically generated, edit file under project/java dir' > ../src/$F
+	cat $F | sed "s/package .*;/package $AppFullName;/" >> ../src/$F
 done
 cd ../..
 
@@ -408,6 +409,7 @@ cat project/src/Globals.java | \
 mv -f project/src/Globals.java.1 project/src/Globals.java
 
 echo Patching project/jni/Settings.mk
+echo '# DO NOT EDIT THIS FILE - it is automatically generated, edit file SettingsTemplate.mk' > project/jni/Settings.mk
 cat project/jni/SettingsTemplate.mk | \
 	sed "s/APP_MODULES := .*/APP_MODULES := application sdl-$LibSdlVersion sdl_main stlport jpeg png ogg flac vorbis freetype $CompiledLibraries/" | \
 	sed "s/APP_ABI := .*/APP_ABI := $MultiABI/" | \
@@ -421,7 +423,7 @@ cat project/jni/SettingsTemplate.mk | \
 	sed "s^SDL_ADDITIONAL_CFLAGS :=.*^SDL_ADDITIONAL_CFLAGS := $RedefinedKeycodes^" | \
 	sed "s^APPLICATION_SUBDIRS_BUILD :=.*^APPLICATION_SUBDIRS_BUILD := $AppSubdirsBuild^" | \
 	sed "s^APPLICATION_CUSTOM_BUILD_SCRIPT :=.*^APPLICATION_CUSTOM_BUILD_SCRIPT := $CustomBuildScript^" | \
-	sed "s^SDL_VERSION :=.*^SDL_VERSION := $LibSdlVersion^"  > \
+	sed "s^SDL_VERSION :=.*^SDL_VERSION := $LibSdlVersion^"  >> \
 	project/jni/Settings.mk
 
 echo Patching strings.xml
@@ -435,7 +437,7 @@ for F in */strings.xml; do
 done
 cd ../../..
 
-echo If you change libSDL version you have to clean all files in project/libs/obj
+echo Cleaning up dependencies
 rm -rf project/libs/*
 for OUT in obj; do
 rm -rf project/$OUT/local/*/objs/sdl_main/* project/$OUT/local/*/libsdl_main.so