diff --git a/ChangeAppSettings.sh b/ChangeAppSettings.sh
index 0f3fdba41..6a298aab1 100755
--- a/ChangeAppSettings.sh
+++ b/ChangeAppSettings.sh
@@ -319,7 +319,7 @@ if [ "$LibSdlVersionOld" '!=' "$LibSdlVersion" ]; then
 	rm -rf project/bin/ndk/local/*/objs/application project/bin/ndk/local/*/libapplication.so
 fi
 if [ "$CompiledLibrariesOld" '!=' "$CompiledLibraries" ]; then
-	rm -rf project/bin/ndk/local/*/*.so
+	rm -rf project/bin/ndk/local/*/*.so project/bin/ndk/local/*/objs/*
 fi
 
 echo Done
diff --git a/RecompileAllApps.sh b/RecompileAllApps.sh
index 491c886ec..ed386c783 100755
--- a/RecompileAllApps.sh
+++ b/RecompileAllApps.sh
@@ -32,6 +32,8 @@ for APP1 in project/jni/application/*/AppSettings.cfg; do
 	fi
 	rm -f project/jni/application/src
 	ln -s $APP project/jni/application/src
+	rm -rf project/bin/ndk/local/*/libapplication.so project/bin/ndk/local/*/objs/application
+	rm -rf project/bin/ndk/local/*/libsdl*.so project/bin/ndk/local/*/objs/sdl*
 	./ChangeAppSettings.sh -a
 	echo Compiling $APP
 	OLDPATH="`pwd`"